miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST039574
species:
Physcomitrella patens
miRNA family:
MIR1023
source:
miRBase, original name:
ppt-MIR1023b
(
MI0005961
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACACTCTCTCCATTTCTCTGC
miRNA*
AGAGAATTGAAGAGAGTGCAT
mismatches:
4
bulges:
0
View larger
pre-miRNA
GAAGCGCGGCGGGCCAGCTTGCAATTTCATGAC
ACACTCTCTCCATTTCTCTGC
CTGTCATGACTTGGTTGATCGATGGAGCGGTGGTTTTCATTGCCCG
ATTGAGGATCAGGAGTTGGGG
AGAGAATTGAAGAGAGTGCAT
TGTGAATTGCAAGCTCCTCCTTTCTTTTCG
dot-bracket secondary structure
((((...((.(((..(((((((((((.((..(.
.((((((((.((.((((((.(
(((......(((((((..(((((((.((((((.....)))))))).
))))).)))))))...)))).
)))))).)).))))))))..)
..))))))))))))))))))...))))...
SIMILARITIES
miRBase
ppt-MIR1023b
:
1e-94
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MIR1023: 2e-93
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"